HsaEX1024725 @ hg38
Exon Skipping
Gene
ENSG00000109063 | MYH3
Description
myosin heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:7573]
Coordinates
chr17:10649577-10651668:-
Coord C1 exon
chr17:10651512-10651668
Coord A exon
chr17:10650374-10650401
Coord C2 exon
chr17:10649577-10649685
Length
28 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTTTCCTCTGGCAGATC
3' ss Score
10.78
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
ACCTACTCAGGCCTCTTCTGTGTCACTGTCAACCCCTACAAGTGGCTGCCGGTGTACAACCCCGAGGTGGTGGAAGGCTACCGAGGCAAAAAGCGCCAGGAGGCCCCACCCCACATCTTCTCCATCTCTGACAACGCCTATCAGTTCATGCTGACTG
Seq A exon
ATCGTGAAAACCAGTCCATTCTGATCAC
Seq C2 exon
CGGAGAATCCGGGGCAGGAAAGACTGTGAACACCAAACGGGTCATCCAGTACTTTGCAACAATTGCAGCTACTGGGGACCTGGCCAAGAAGAAGGACTCCAAAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109063-'10-7,'10-6,11-7
Average complexity
S
Mappability confidence:
88%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.6=100)
A:
PF0006316=Myosin_head=FE(1.3=100)
C2:
PF0006316=Myosin_head=FE(5.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCATCTCTGACAACGCCT
R:
GGTCCCCAGTAGCTGCAATTG
Band lengths:
119-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains