MmuEX6086266 @ mm9
Exon Skipping
Gene
ENSMUSG00000020908 | Myh3
Description
myosin, heavy polypeptide 3, skeletal muscle, embryonic [Source:MGI Symbol;Acc:MGI:1339709]
Coordinates
chr11:66896353-66897360:+
Coord C1 exon
chr11:66896353-66896509
Coord A exon
chr11:66896901-66896928
Coord C2 exon
chr11:66897252-66897360
Length
28 bp
Sequences
Splice sites
3' ss Seq
GCTTTCTTCCCCTCTCACAGATC
3' ss Score
11.25
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
ACCTATTCAGGCCTCTTCTGTGTCACTGTCAACCCCTACAAATGGCTGCCAGTGTACAACCCCGAGGTGGTGGACGGCTACCGAGGCAAAAAACGCCAGGAGGCTCCGCCCCACATCTTCTCCATCTCCGACAACGCCTACCAGTTCATGCTGACTG
Seq A exon
ATCGTGAGAACCAGTCTATCCTGATCAC
Seq C2 exon
CGGAGAATCCGGGGCCGGGAAGACGGTGAACACCAAGCGGGTCATCCAGTACTTTGCAACAATTGCAGCCACTGGGGACCTTGCCAAGAAGAAGGACTCCAAAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020908-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.6=100)
A:
PF0006316=Myosin_head=FE(1.3=100)
C2:
PF0006316=Myosin_head=FE(5.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGCCTACCAGTTCATGCTG
R:
CTTCTTCTTGGCAAGGTCCCC
Band lengths:
119-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: