BtaEX6087206 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011803 | MYHC-EMBRYONIC
Description
myosin-3 [Source:RefSeq peptide;Acc:NP_001095305]
Coordinates
chr19:30243957-30244960:-
Coord C1 exon
chr19:30244868-30244960
Coord A exon
chr19:30244135-30244198
Coord C2 exon
chr19:30243957-30244055
Length
64 bp
Sequences
Splice sites
3' ss Seq
TGGTCTCCCTTCCCCGACAGGGC
3' ss Score
10.35
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
GGGACACTGGAAGACCAGATCATCAGCGCCAACCCACTGCTGGAGGCCTTCGGGAATGCCAAGACCGTGAGGAACGACAACTCGTCCCGCTTT
Seq A exon
GGCAAGTTCATCCGCATCCATTTTGGTACCACGGGAAAGCTGGCCTCTGCAGATATTGAAACAT
Seq C2 exon
ATCTGCTGGAAAAGTCAAGAGTGACCTTCCAGCTGAAGGCTGAGAGAAGCTACCACATCTTCTACCAGATTCTTTCCAATAAGAAGCCTGAGCTCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011803-'10-10,'10-9,12-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.4=100)
A:
PF0006316=Myosin_head=FE(3.1=100)
C2:
PF0006316=Myosin_head=FE(4.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGACCAGATCATCAGCGCC
R:
TGTGGTAGCTTCTCTCAGCCT
Band lengths:
141-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]