HsaEX0040969 @ hg19
Exon Skipping
Gene
ENSG00000109063 | MYH3
Description
myosin, heavy chain 3, skeletal muscle, embryonic [Source:HGNC Symbol;Acc:7573]
Coordinates
chr17:10550499-10551966:-
Coord C1 exon
chr17:10551874-10551966
Coord A exon
chr17:10550680-10550743
Coord C2 exon
chr17:10550499-10550597
Length
64 bp
Sequences
Splice sites
3' ss Seq
CTGAATCCCGCCCCATACAGGGC
3' ss Score
6.92
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
GGGACTCTGGAAGATCAAATCATCAGTGCCAATCCCCTGCTGGAGGCCTTTGGGAACGCCAAGACTGTGAGGAATGACAACTCCTCCCGTTTT
Seq A exon
GGCAAGTTCATCCGAATCCATTTTGGAACCACTGGGAAGCTGGCCTCTGCAGATATTGAAACTT
Seq C2 exon
ATCTTCTGGAAAAATCAAGAGTCACTTTCCAGCTGAAGGCTGAAAGAAGCTACCACATCTTCTACCAGATTCTTTCTAACAAGAAGCCTGAGCTCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109063-'6-7,'6-6,7-7
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.4=100)
A:
PF0006316=Myosin_head=FE(3.1=100)
C2:
PF0006316=Myosin_head=FE(4.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATCAGTGCCAATCCCCTG
R:
TGTGGTAGCTTCTTTCAGCCT
Band lengths:
132-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)