MmuEX7034392 @ mm10
Exon Skipping
Gene
ENSMUSG00000020908 | Myh3
Description
myosin, heavy polypeptide 3, skeletal muscle, embryonic [Source:MGI Symbol;Acc:MGI:1339709]
Coordinates
chr11:67084075-67085041:+
Coord C1 exon
chr11:67084075-67084167
Coord A exon
chr11:67084795-67084858
Coord C2 exon
chr11:67084943-67085041
Length
64 bp
Sequences
Splice sites
3' ss Seq
CTCCTTCTCCCTCTATGCAGGGC
3' ss Score
11.07
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
GGGACGCTGGAGGATCAAATTATCAGCGCTAACCCCCTGCTGGAGGCCTTTGGGAACGCCAAGACCGTGAGGAACGACAACTCGTCTCGCTTT
Seq A exon
GGCAAGTTCATCCGCATCCATTTTGGCACCACTGGGAAGCTGGCTTCTGCAGATATTGAAACTT
Seq C2 exon
ATCTGCTGGAAAAGTCCAGAGTCACCTTCCAGCTGAAGGCTGAGAGAAGCTACCACATCTTCTACCAGATTCTCTCCAACAAGAAACCTGAGCTGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020908-'4-20,'4-9,15-20=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.4=100)
A:
PF0006316=Myosin_head=FE(3.1=100)
C2:
PF0006316=Myosin_head=FE(4.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTATCAGCGCTAACCCCCTG
R:
TGTGGTAGCTTCTCTCAGCCT
Band lengths:
132-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types