BtaEX6087276 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31007684-31011349:+
Coord C1 exon
chr19:31007684-31007810
Coord A exon
chr19:31009644-31009899
Coord C2 exon
chr19:31011105-31011349
Length
256 bp
Sequences
Splice sites
3' ss Seq
ATGTCGACTCTTTCCTCCAGCTG
3' ss Score
8.55
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
GTATGAAACAAGACTTTATGGGGACTGGTGTCAAACAGTAGCAGAGAAGTCCCAGTACAACCTTTCACGGCCACTTCTGAGACGTGACCCGGAGACAAAGCAGATCACTGTCAACTTTAGTCCACAG
Seq A exon
CTGGTCTCCGTGCTGAAAGAAATGAGTTATCTTCAACCCCAGCAAATGACGCACATCCCCGAGACAGCAGCAGCCATGTTCTCCTCCAGAGAGTTCTACCGGCAGCTCGTGGCTAATTTGGAGTTGACGGCAACTTGGTACAACAAGGTTATGAAAACTCTGCTCGAGGTGGAATTTCCATTAGTTCAGGAAGAGCTGCAAGATATCGATCTTTGCCTGAGAGTTGCAGAGGAGACTCTGAACTGGAAGACAGAAG
Seq C2 exon
CAGGTATTTGGGATTATGTCATTCAGATCACCAATAGTATTCATGATCTCGAACAAAGAATTCAGAAAACTAAAGACAATGTGGAAGAGATTCAGAGCATCATGAAAACATGGATGTCACCAATGTTTAAGAGAAAAGATGGGAAAAAGGAATGCCTTCTCTCTATGGATGATCAGCATGATCGAGTGGAAAAATATTACTGTCACATCAAAGAATCTGGCCTGAAGATCCATGCCCTTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509-'13-17,'13-16,14-17=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(7.2=100)
A:
PF083857=DHC_N1=FE(14.6=100)
C2:
PF083857=DHC_N1=PD(1.2=8.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCACGGCCACTTCTGAGAC
R:
GCACAAGGGCATGGATCTTCA
Band lengths:
308-564
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]