GgaEX6015791 @ galGal4
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr18:1046969-1050535:+
Coord C1 exon
chr18:1046969-1047095
Coord A exon
chr18:1048978-1049233
Coord C2 exon
chr18:1050294-1050535
Length
256 bp
Sequences
Splice sites
3' ss Seq
TCTCTGCCTTGGTTCTCCAGTTG
3' ss Score
8.78
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTATCAAGAAAAACTGTACATAAACTGGTCCCAGACAGTCTCTGAAAAGTCACAGTACAACCTCACTCAACCACTCATCCGGCGAGAGCCAGAAACCAAACTGCTCACGGTCAATTTTGATCCCCAG
Seq A exon
TTGGTTTCAGTGCTGAGAGAGGTGAGCTACTTGTCTGGCAGCCAGATGGGAAGCATCCCACCAACAGCAGCAGAGATCTATTCCTCCAAGGAATCGTACCGACAGATGGTGGCTAATTTGGAGCTCATGGTGAACAGATACAACAAGATCCTGAAGACAGTCCTGGAGGTTGAATACCCTCTAATACAGGAGCAGCTGCGGGATATTGACTTGAAGCTGAAAGAGGCAGAGGAAACATTGAACTGGAAGATGGAAG
Seq C2 exon
GTGTCTGGGACCACATTTCCATGGTGATGGATGATGTCCATGACCTCGAGCAGAGGATACAGAAAGCCAAAAGCAACGTTGAGGAGATCCAGAGCTTTGTGCGGTCATGGGGGTCACCCATATTTAAGAGGAAAGATGGGAAAAAGGAATCACTGCTGAACCTGGAGGACTGCCAGGACCGTCTGGAGAAGAGTTACAGCCTGGTCCAGGAGTCAGGGCTGAGGATTCATTCGCTGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.012 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(22.3=100)
A:
PF083857=DHC_N1=FE(45.2=100)
C2:
PF083857=DHC_N1=PD(3.2=7.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGTCCCAGACAGTCTCTG
R:
ACTCTTCTCCAGACGGTCCTG
Band lengths:
298-554
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]