RnoEX6047728 @ rn6
Exon Skipping
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52657652-52659937:-
Coord C1 exon
chr10:52659811-52659937
Coord A exon
chr10:52658952-52659207
Coord C2 exon
chr10:52657652-52657893
Length
256 bp
Sequences
Splice sites
3' ss Seq
GTGTTTGCCTCTTTCCTCAGCTG
3' ss Score
9.52
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTATGAGAGAAGACTTTATGAGGACTGGTGTCAGACAGTGTCTGAGAAGTCACAGCGCAATCTCTCCCTACCACTTTTGCATCGTGACCCCATCACAAAGCAGCTCTCTGTCAACTTTAACTCACAG
Seq A exon
CTGATTTCAGTGTTGAAAGAAATGAACTATCTTCAGCCCACTGAGGTGAAACCGATCCCCGAGACCGCAGCAGCCATGTTCTCCTCCAGGGAATTCTATCGCCAGCTTGTGGCCAACTTGGAGTTGATGGCAAATTGGTACAACAAGGTTATAACAACTCTGCTGGAGGTGGAATTTCCACTAGTGGAGGAAGAACTGCAAAATATTGATCTCCGTCTGAGAGCTGCAGAGGAGACTCTGAGCTGGAAAACAGAAG
Seq C2 exon
GCATTTGGGATTATGCCATGCAAATAACCAATAGCATTCATGACCTGGAACGAAGAATTCAGAAGACAAAAGACAACGTGGAAGAGATTCAAACCATCATGAAAACATGGGTGTCTCCAATATTTAAGAGAAAGGATGGGAAAAAAGAATGCCCCCTTTCTCTGGATGATCAGCAGGATCTCCTGGAAAAATACTACAGTCTCATCAGGGAATCAGGCCTTAAGATTCATGCTCTTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171-'14-14,'14-13,15-14=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(7.2=100)
A:
PF083857=DHC_N1=FE(14.6=100)
C2:
PF083857=DHC_N1=PD(1.0=7.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACAGCGCAATCTCTCCCTA
R:
AGGCCTGATTCCCTGATGAGA
Band lengths:
298-554
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]