BtaEX6087355 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MLX8]
Coordinates
chr19:33612122-33618958:-
Coord C1 exon
chr19:33618849-33618958
Coord A exon
chr19:33616855-33617055
Coord C2 exon
chr19:33612122-33612243
Length
201 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTCCTGGCAACTCAGGTG
3' ss Score
4.86
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
AATGACTACAACCTGTGGACTGCATACCAGAACCAGGAGACTCAGCAGGTGCAGATGGAGGAGAGGAATGTCTTCTGTGGCTCTTACAACATCCGCATCCTCTCTGACAC
Seq A exon
GTGGGACCGAAACAGAATCATCCACTATTCTGGGGGAGATTTGTTAGCTGTGTCATCCAATCGAAAGATCCAGCTTCTGGACATCATACGTGTAAAGGAGATACCCATCAGGTTTCGAGGCCATGCTGGAAGTGTCCGGGCCCTCTTCTTGTGTGAAGAAGAAAACTTTCTCCTGAGTGGGAGTTATGACCTGAGTATCAG
Seq C2 exon
GTACTGGGATCTGAAAAGTGGGGCTTGTATACGCATCTTCAATGGCCACCAGGGGACCATCACCTGCATGGATGTGTATAAGAACAAGCTTGCCTCTGGAGCAAAAGATTGCCAGGTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002605-'17-17,'17-16,18-17=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0040027=WD40=PU(89.7=51.5)
C2:
PF0040027=WD40=PD(7.7=7.1),PF0040027=WD40=PU(91.9=81.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACTACAACCTGTGGACTGC
R:
CAATCTTTTGCTCCAGAGGCA
Band lengths:
220-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]