MmuEX0018926 @ mm10
Exon Skipping
Gene
ENSMUSG00000090173 | Fbxw10
Description
F-box and WD-40 domain protein 10 [Source:MGI Symbol;Acc:MGI:3052463]
Coordinates
chr11:62857686-62862751:+
Coord C1 exon
chr11:62857686-62857795
Coord A exon
chr11:62859840-62860040
Coord C2 exon
chr11:62862630-62862751
Length
201 bp
Sequences
Splice sites
3' ss Seq
CGCCACCTCCTGAAACCCAGGTT
3' ss Score
2.16
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
ACTGATTACAACTTGTGGAATGCCTACCAGAACCAGGAAACCCAGCTGGTCCAGATGGAGGAGAGGAACGTTTTCTGCGGCACCTACAACATCCGCGTCCTCTCTGACAC
Seq A exon
GTTTGACCAAAACAGAATCATTCACTATAACGGGGGAGACCTAATGGCCATATCATCCAATCGGAAGATCCACCTTCTAGATATCATGCAGACCAAGGAGCTGCCCATCGAGTTCCGAGGCCATGCCGGCAGCGTCAGGGCTCTCTTCCTGTCTGAGGAGGACAATATTCTCCTGAGTGGGAGTTACGATCTGAGCATAAG
Seq C2 exon
ATACTGGGATGTGAAAACCGGGGCTTGTGTACGAATCTTTTATGGCCACCAGGGGACAATCACTTGCCTGGATGTCTATAAGAACAGGCTTGTATCTGGAGCAAAAGATGGACAGGTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000090173_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0040027=WD40=PU(89.7=51.5)
C2:
PF0040027=WD40=PD(7.7=7.1),PF0040027=WD40=PU(91.9=81.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGATTACAACTTGTGGAATGCCT
R:
CACCTGTCCATCTTTTGCTCCA
Band lengths:
228-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types