RnoEX0035432 @ rn6
Exon Skipping
Gene
ENSRNOG00000003287 | Fbxw10
Description
F-box and WD-40 domain protein 10 [Source:MGI Symbol;Acc:MGI:3052463]
Coordinates
chr10:49271821-49276560:+
Coord C1 exon
chr10:49271821-49271930
Coord A exon
chr10:49273813-49274013
Coord C2 exon
chr10:49276439-49276560
Length
201 bp
Sequences
Splice sites
3' ss Seq
CACCACCTCCTGAAACCCAGGTT
3' ss Score
2.14
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
AATGATTACAACTTGTGGACTGCTTACCAGAACCAGGAAACTCAGCTGATCCAGATGGAGGAAAGGAATGTTTTCTGTGGCACCTACAACATCCGCATTCTCTCTGACAC
Seq A exon
GTTTGACCAAAACAGAATCATCCACTATAGCGGGGGCGATCTAATGGCTGTGTCCTCCAATCGGAAGATCCACCTCCTGGACATCATGCAGGTCAGGGAGCTGCCCATCGAGTTCCGAGGCCACGCTGGCAGTATCAGGGCTCTCTTCCTGTCGGAGGAGGACAACATTCTTCTGAGTGGGAGTTACGATCTGAGCATCAG
Seq C2 exon
ATACTGGGATATAAAAACTGGGGCTTGCATACGAATCTTTTACGGCCACCAGGGGACAATCACTTGCCTGGATCTATATAAGAACAGACTTGTATCTGGAGCAAAAGATGGACAGGTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003287-'13-16,'13-13,14-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0040027=WD40=PU(89.7=51.5)
C2:
PF0040027=WD40=PD(7.7=7.1),PF0040027=WD40=PU(91.9=81.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATTACAACTTGTGGACTGCT
R:
TCACCTGTCCATCTTTTGCTCC
Band lengths:
228-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]