BtaEX6087923 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013103 | COL1A1
Description
Bos taurus collagen, type I, alpha 1 (COL1A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001034039]
Coordinates
chr19:37095614-37096150:+
Coord C1 exon
chr19:37095614-37095712
Coord A exon
chr19:37095912-37095965
Coord C2 exon
chr19:37096052-37096150
Length
54 bp
Sequences
Splice sites
3' ss Seq
CCTGTCTGCCTCCCCCTTAGGGT
3' ss Score
11.29
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GGTCCTGCTGGTGAACGCGGTGCTCCTGGCCCTGCTGGCCCCAAAGGTTCTCCTGGTGAAGCTGGTCGCCCCGGTGAAGCTGGTCTGCCCGGTGCCAAG
Seq A exon
GGTCTGACTGGAAGCCCTGGCAGCCCGGGTCCTGATGGCAAAACTGGCCCCCCT
Seq C2 exon
GGTCCCGCCGGTCAAGATGGCCGCCCTGGACCTCCAGGCCCTCCCGGTGCCCGTGGTCAGGCTGGCGTGATGGGTTTCCCTGGACCTAAAGGTGCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013103-'24-24,'24-23,25-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(43.9=87.9)
A:
NO
C2:
PF0139113=Collagen=PU(28.0=78.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTCCTGGTGAAGCTGGTC
R:
GGAAACCCATCACGCCAGC
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]