BtaEX6087927 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013103 | COL1A1
Description
Bos taurus collagen, type I, alpha 1 (COL1A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001034039]
Coordinates
chr19:37093483-37093851:+
Coord C1 exon
chr19:37093483-37093527
Coord A exon
chr19:37093644-37093697
Coord C2 exon
chr19:37093807-37093851
Length
54 bp
Sequences
Splice sites
3' ss Seq
CCTCTTGGTTTTGTTCTCAGGGC
3' ss Score
9.79
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGCGAGCCTGGTAGCCCCGGTGAAAATGGAGCTCCTGGTCAGATG
Seq A exon
GGCCCCCGTGGTCTGCCTGGTGAGAGAGGTCGCCCTGGAGCCCCTGGCCCTGCT
Seq C2 exon
GGTGCTCGAGGAAATGATGGTGCGACTGGTGCTGCTGGGCCCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013103-'14-14,'14-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(13.3=53.3),PF0139113=Collagen=PU(8.3=33.3)
A:
PF0139113=Collagen=FE(28.3=100)
C2:
PF0139113=Collagen=FE(23.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGTAGCCCCGGTGAAAAT
R:
CAGCAGCACCAGTCGCAC
Band lengths:
76-130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]