BtaEX6087966 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019498 | ITGA3
Description
Integrin alpha-3 Integrin alpha-3 heavy chain Integrin alpha-3 light chain [Source:UniProtKB/Swiss-Prot;Acc:F1MMS9]
Coordinates
chr19:37215694-37219027:-
Coord C1 exon
chr19:37218820-37219027
Coord A exon
chr19:37218158-37218354
Coord C2 exon
chr19:37215694-37215782
Length
197 bp
Sequences
Splice sites
3' ss Seq
CCTCCTTCTTTCCTTTGCAGGTG
3' ss Score
14.67
5' ss Seq
AGGGTATGA
5' ss Score
6.84
Exon sequences
Seq C1 exon
GCTACACGATGCAGGTGGGCAGTGCCATCTTGCACCCCACAAACATCACCATTGTGACAGGTGCCCCGCGGCACCAACATGTGGGCGCTGTCTTTTTGCTGAGCCAGGAAGCAGGTGGAGACTTGCGGAGGAGGCAGGTGCTGGAGGGCACGCAGGTGGGAGCCTATTTTGGCAGTGCCATTGCCCTGGCAGACCTGAACAATGATGG
Seq A exon
GTGGCAGGACCTCCTGGTGGGTGCCCCCTATTACTTTGAGCGGAAAGAGGAAGTAGGGGGTGCGATTTATATCTTCATGAACCAGGCAGGCACCTCCTTCCCAGACCACCCCTCCCTCCTTCTTCATGGCCCCAGTCGCTCCGCCTTCGGCTTCTCTGTGGCAAGCATTGGTGACGTCAACCAAGACGGATTCCAGG
Seq C2 exon
ACATTGCTGTGGGAGCCCCATTCGAGGGCTTGGGCAAAGTGTACATCTACCATGGCAGCTCCAGGGGGCTCCTCAGACAGCCCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019498-'5-9,'5-8,6-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0183918=FG-GAP=PU(33.3=18.6)
A:
PF0183918=FG-GAP=PD(64.1=37.3)
C2:
PF135171=VCBS=PD(4.0=10.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCTTGCACCCCACAAACA
R:
TGGAGCTGCCATGGTAGATGT
Band lengths:
247-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]