MmuEX6089026 @ mm10
Exon Skipping
Gene
ENSMUSG00000001507 | Itga3
Description
integrin alpha 3 [Source:MGI Symbol;Acc:MGI:96602]
Coordinates
chr11:95059779-95062763:-
Coord C1 exon
chr11:95062553-95062763
Coord A exon
chr11:95061878-95062074
Coord C2 exon
chr11:95059779-95059867
Length
197 bp
Sequences
Splice sites
3' ss Seq
CCCACTCTTCCCCTGTGCAGGTG
3' ss Score
11.52
5' ss Seq
AGGGTAGGA
5' ss Score
6.45
Exon sequences
Seq C1 exon
GGTACACGGTGCAGGTAGGCAACGCCATCCTACATCCCACGGACATCATCACTGTTGTGACGGGTGCCCCACGGCACCAACATATGGGCGCTGTCTTCTTGCTGAAGCAAGAGTCAGGTGGAGACCTGCAGAGGAAGCAGGTGCTGAAGGGCACGCAGGTGGGCGCTTATTTTGGCAGTGCCATTGCCCTGGCAGACCTGAACAATGATGG
Seq A exon
GTGGCAGGACCTCCTGGTGGGTGCTCCCTACTACTTCGAACGGAAAGAGGAGGTAGGGGGTGCCGTCTATGTCTTCATGAACCAGGCGGGCGCATCCTTCCCTGATCAACCTTCCCTCCTGCTTCACGGCCCCAGCCGCTCTGCCTTTGGCATCTCTATAGCCAGCATCGGTGACATCAACCAGGATGGATTCCAGG
Seq C2 exon
ACATCGCTGTGGGAGCCCCATTTGAGGGCTTGGGCAAAGTCTACATCTACCACAGCAGCTCCGGGGGGCTCCTCAGGCAGCCCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001507-'12-12,'12-11,13-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135171=VCBS=PU(6.7=7.0)
A:
PF135171=VCBS=FE(88.0=100)
C2:
PF135171=VCBS=PD(4.0=10.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACGCCATCCTACATCCCAC
R:
CGGAGCTGCTGTGGTAGATGT
Band lengths:
255-452
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types