BtaEX6088807 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019218 | ATP6V0A1
Description
Bos taurus ATPase, H+ transporting, lysosomal V0 subunit a1 (ATP6V0A1), mRNA. [Source:RefSeq mRNA;Acc:NM_174754]
Coordinates
chr19:43225173-43228813:+
Coord C1 exon
chr19:43225173-43225385
Coord A exon
chr19:43227649-43227799
Coord C2 exon
chr19:43228674-43228813
Length
151 bp
Sequences
Splice sites
3' ss Seq
CTGTGCTTGATGTTTCCCAGGAG
3' ss Score
7.69
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTTCTGAACCAAACAGAGGATCACCGCCAGAGGGTTCTTCAGGCTGCTGCCAAGAACATCCGTGTCTGGTTCATCAAGGTGCGGAAGATGAAGGCCATCTACCATACTTTGAACCTGTGCAACATAGATGTGACCCAGAAGTGCCTAATTGCGGAGGTCTGGTGCCCTGTCACTGACCTTGACTCCATCCAGTTTGCGCTCAGAAGGGGCACG
Seq A exon
GAGCACAGTGGTTCCACCGTGCCCTCCATTCTGAACAGGATGCAGACAAACCAGACTCCCCCCACCTATAACAAGACCAACAAGTTCACGTATGGCTTTCAGAACATAGTGGATGCTTATGGAATTGGAACTTACCGAGAGATAAATCCAG
Seq C2 exon
CTCCATACACCATCATCACTTTCCCTTTCCTGTTTGCTGTGATGTTTGGTGACCTTGGCCATGGCATTTTGATGACTCTTTTTGCTGTATGGATGGTGTTAAGAGAGAGCCGGATCCTCTCCCAGAAGAATGAGAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019218-'18-16,'18-15,20-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.176 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(8.7=100)
A:
PF0149614=V_ATPase_I=FE(6.2=100)
C2:
PF0149614=V_ATPase_I=FE(5.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGGTGCGGAAGATGAAGG
R:
TCCGGCTCTCTCTTAACACCA
Band lengths:
254-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]