GgaEX1010027 @ galGal4
Exon Skipping
Gene
ENSGALG00000003256 | ATP6V0A1
Description
V-type proton ATPase 116 kDa subunit a isoform 1 [Source:RefSeq peptide;Acc:NP_990055]
Coordinates
chr27:4940624-4941979:+
Coord C1 exon
chr27:4940624-4940836
Coord A exon
chr27:4941497-4941647
Coord C2 exon
chr27:4941840-4941979
Length
151 bp
Sequences
Splice sites
3' ss Seq
TTACTTTTTTTCCCAAACAGGAG
3' ss Score
10.86
5' ss Seq
CAGGTAGAT
5' ss Score
7.25
Exon sequences
Seq C1 exon
GTGCTGAACCAAACAGAGGATCACCGCCAAAGAGTTCTGCAGGCAGCTGCTAAAAATATTCGGGTCTGGTTCATCAAAGTGCGCAAGATGAAGGCCATCTACCATACCCTGAATCTGTGCAATATTGACGTGACACAGAAGTGCTTGATTGCTGAAGTCTGGTGTCCCGTAGCTGACCTCGATTCTATCCAGTTTGCTCTCAGGAGAGGCACT
Seq A exon
GAGCACAGTGGTTCCACTGTCCCATCTATTTTAAATCGGATGCAAACCAATCAGACCCCACCAACATACAACAAAACTAACAAGTTCACTTGTGGCTTTCAGAACATTGTTGATGCTTACGGCATTGGAACTTATCGGGAAATAAATCCAG
Seq C2 exon
CCCCATATACGATCATTACCTTCCCGTTTCTGTTTGCTGTGATGTTTGGAGATTTTGGACATGGAATCCTGATGACTCTGATTGCTATTTGGATGGTGCTTAGGGAGAGTCGGATTCTGTCGCAGAAAAGTGACAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003256-'18-22,'18-19,20-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.176 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(10.1=100)
A:
PF0149614=V_ATPase_I=FE(6.3=100)
C2:
PF0149614=V_ATPase_I=FE(5.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGTGCGCAAGATGAAGGC
R:
ATCCGACTCTCCCTAAGCACC
Band lengths:
254-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]