DreEX0015940 @ danRer10
Exon Skipping
Gene
ENSDARG00000015174 | atp6v0a1b
Description
ATPase, H+ transporting, lysosomal V0 subunit a1b [Source:ZFIN;Acc:ZDB-GENE-050522-215]
Coordinates
chr24:7591372-7594225:-
Coord C1 exon
chr24:7594013-7594225
Coord A exon
chr24:7593473-7593623
Coord C2 exon
chr24:7591372-7591511
Length
151 bp
Sequences
Splice sites
3' ss Seq
TTTACCCCGAATTAATTTAGGAA
3' ss Score
6.4
5' ss Seq
CAGGTATCA
5' ss Score
7.33
Exon sequences
Seq C1 exon
GTATTGAATCAAACTGAAGACCACCGGCAGAGGGTTTTGCAGGCCGCTGCAAAAACTATGCGCGTGTGGTTTATCAAAGTGAGGAAGATGAAGGCCATTTATCACACGTTGAACCTCTGCAACATCGACGTTACACAGAAATGTTTGATTGCTGAGGTCTGGTGCCCCGTTTCTGACCTTGATTCCATTCAGTTTGCTTTGCGGAGGGGAACA
Seq A exon
GAAAGAAGTGGGTCTACAGTTCCCTCCATCTTAAACCGAATGCAGACCAAACAGACTCCACCTACTTACAACAAGACCAACAAGTTCACCTCTGGATTCCAAAACATTGTGGATGCTTACGGCATCGGAACCTACCGAGAGATCAACCCAG
Seq C2 exon
CCCCGTACACAATCATCACGTTCCCGTTCCTGTTTGCTGTCATGTTTGGGGACATGGGGCATGGCGTGCTGATGACCTCTGCTGCGCTTTACCTTGTCCTTAGAGAGACCCGTCTGCTTGCTCAGAAGAGTGACAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015174-'10-13,'10-11,11-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.275 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(18.8=100)
A:
PF0149614=V_ATPase_I=FE(13.4=100)
C2:
PF0149614=V_ATPase_I=FE(5.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAAACTGAAGACCACCGGC
R:
GACAGCAAACAGGAACGGGAA
Band lengths:
247-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]