BtaEX6090367 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000920 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr19:54381348-54384566:+
Coord C1 exon
chr19:54381348-54381565
Coord A exon
chr19:54384000-54384207
Coord C2 exon
chr19:54384451-54384566
Length
208 bp
Sequences
Splice sites
3' ss Seq
TGCTGTCACTCGCTCCCCAGGCC
3' ss Score
9.89
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
AACAACCTGACGGAGCTGAAGTCCTTCGGGTCCCCCCCGGATGCCGTGGTCAACGTCACGGCCGCTGTGATGATTCTGACCGCACCTGGGGGCAAGATCCCCAAGGACAAGAGCTGGAAAGCTGCGAAAATCATGATGGGCAAGGTGGACACCTTCCTGGACTCCTTGAAAAAGTTCGACAAGGAGCACATCCCCGAGGCCTGCCTGAAAGCGTTCAA
Seq A exon
GCCCTACCAAGGCAACCCGACCTTCGACCCCGAGTTCATCCGCTCAAAGTCCGCGGCTGCCGCGGGCCTGTGCTCTTGGTGCATCAACATCGTCCGCTTCTACGAGGTCTACTGCGACGTGGCCCCCAAGAGGCAGGCCCTGGAGGAGGCCAACGCTGAGCTGGCCGAGGCCCAGGAGAAGCTCTCCCGCATCAAGAACAAGATTGCC
Seq C2 exon
GAGCTCAACGCCAATCTGAGCAACCTGACGTCGGCATTTGAGAAAGCGACGGCCGAGAAGATCAAGTGCCAGCAGGAGGCTGATGCCACCAATAGGGTGATCTCGCTGGCTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000920-'61-64,'61-63,62-64=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(20.9=100)
A:
PF127772=MT=FE(20.1=100),PF041569=IncA=PU(47.1=68.6)
C2:
PF127772=MT=FE(11.0=100),PF041569=IncA=FE(37.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCTGACGGAGCTGAAGTC
R:
CCTGCTGGCACTTGATCTTCT
Band lengths:
292-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]