RnoEX6050814 @ rn6
Exon Skipping
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107060768-107063089:-
Coord C1 exon
chr10:107062872-107063089
Coord A exon
chr10:107061107-107061314
Coord C2 exon
chr10:107060768-107060883
Length
208 bp
Sequences
Splice sites
3' ss Seq
TGTGCTTTCTTTCCTCCCAGGCC
3' ss Score
12.07
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
AACAACCTGACAGAGCTGAAGTCCTTCGGATCCCCACCAGATGCCGTGGTCAACGTCACAGCCGCTGTCATGATCCTGACGGCGCCTGGGGGCAAGATCCCCAAGGACAAGAGCTGGAAGGCTGCCAAGATCATGATGGGCAAGGTGGACACATTCCTCGACTCGCTGAAGAGGTTCGACAAGGAACACATCCCGGAAGCCTGCCTAAAGGCCTTCAA
Seq A exon
GCCGTATCAAGGCAACCCCACATTTGACCCTGAGTTCATTCGCTCCAAGTCCACAGCTGCCGCGGGCCTGTGCTCCTGGTGCATCAACATCGTGCGCTTCTATGAGGTCTACTGCGATGTGGCGCCCAAAAGGCAAGCCCTGGAGGAGGCCAATGCAGAGCTGGCTGAAGCACAGGACAAACTGTCCCGGATCAAAAACAAGATTGCT
Seq C2 exon
GAACTCAATGCCAACCTGAACAACCTCACCTCCGCGTTTGAGAAAGCAACAGCTGAGAAAATCAAGTGTCAGCAGGAGGCGGATGCCACCAACAGGGTGATCTCATTGGCTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028-'67-74,'67-73,68-74=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(20.9=100)
A:
PF127772=MT=FE(20.1=100),PF041569=IncA=PU(38.6=55.7)
C2:
PF127772=MT=FE(11.0=100),PF041569=IncA=FE(37.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGACAGAGCTGAAGTCCT
R:
GCCTCCTGCTGACACTTGATT
Band lengths:
294-502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]