MmuEX6091638 @ mm9
Exon Skipping
Gene
ENSMUSG00000033987 | Dnahc17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:117911182-117914162:-
Coord C1 exon
chr11:117913945-117914162
Coord A exon
chr11:117911523-117911730
Coord C2 exon
chr11:117911182-117911297
Length
208 bp
Sequences
Splice sites
3' ss Seq
AATGCTTTCCTTCCTCCCAGGCC
3' ss Score
10.86
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
AACAACCTGACCGAGCTGAAGTCCTTCGGATCCCCGCCAGACGCTGTGGTCAACGTCACAGCTGCTGTCATGATCCTGACAGCGCCTGGGGGCAAGATCCCCAAGGACAAGAGCTGGAAGGCTGCGAAGATCATGATGGGCAAGGTGGACACATTCCTGGACTCGCTGAAGAAGTTCGACAAGGAACACATCCCCGAGGCCTGCCTAAAGGCCTTCAA
Seq A exon
GCCGTACCAAGGCAACCCCACCTTTGACCCTGAGTTCATTCGCTCTAAGTCCACGGCCGCGGCAGGCCTGTGCTCCTGGTGTATCAACATTGTGCGCTTCTATGAGGTCTACTGCGACGTGGCGCCCAAGAGGCAGGCCCTGGAGGAAGCCAACGCCGAGCTGGCTGAGGCACAGGAGAAACTGTCCCGGATCAAAAACAAGATTGCA
Seq C2 exon
GAACTCAATGCCAACCTGAGCAACCTTACCTCGGCATTTGAAAAAGCAACAGCTGAGAAAATCAAGTGTCAGCAGGAGGCAGATGCCACCAATAGGGTGATCTCATTGGCTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987-'68-67,'68-66,69-67=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.001 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PD(39.5=35.6),PF127772=MT=PU(32.4=61.4)
A:
PF127772=MT=FE(20.1=100),PF041569=IncA=PU(38.0=54.3)
C2:
PF127772=MT=FE(11.0=100),PF041569=IncA=FE(38.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCTGACCGAGCTGAAGTC
R:
GCCTCCTGCTGACACTTGATT
Band lengths:
296-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: