BtaEX6090382 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000920 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr19:54361015-54363306:+
Coord C1 exon
chr19:54361015-54361147
Coord A exon
chr19:54362313-54362440
Coord C2 exon
chr19:54363158-54363306
Length
128 bp
Sequences
Splice sites
3' ss Seq
AGCAGCCCTGCCGCCCGCAGGCC
3' ss Score
8.03
5' ss Seq
AAGGTGCGA
5' ss Score
7.16
Exon sequences
Seq C1 exon
GTACTCAGGTCTCTGAACAAGACCTACCAGAACCTGAAGAGGAAGCCGGTGGCCGTGGACCTGGACCCCAAGGCCGTCACCTGTGACGAACTCTTTGGCATCATCAACCCGGCGACCAGGGAGTGGAAAGATG
Seq A exon
GCCTCTTCTCCACCATCATGCGGGACCTGGCCAACATCACTCACGACGGCCCCAAGTGGATCGTGCTGGATGGAGACATAGACCCCATGTGGATCGAGTCCCTCAACACCGTCATGGACGACAACAAG
Seq C2 exon
GTCCTCACCCTGGCCAGCAATGAGCGGATCCCCCTGAACCGCACCATGCGGCTGGTGTTTGAGATCAGCCACCTGAGGACAGCCACGCCGGCCACCGTCTCCAGAGCCGGCATCCTGTACATCAACCCTGCCGATCTGGGCTGGAACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000920-'40-43,'40-42,42-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(32.1=100)
A:
PF077289=AAA_5=FE(30.7=100)
C2:
PF077289=AAA_5=PD(25.5=70.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAACCTGAAGAGGAAGCCG
R:
GATCGGCAGGGTTGATGTACA
Band lengths:
242-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]