MmuEX6091622 @ mm10
Exon Skipping
Gene
ENSMUSG00000033987 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:118078562-118080845:-
Coord C1 exon
chr11:118080713-118080845
Coord A exon
chr11:118079554-118079681
Coord C2 exon
chr11:118078562-118078710
Length
128 bp
Sequences
Splice sites
3' ss Seq
ACCAGCCTGTCTCCCTCCAGGCC
3' ss Score
11.4
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
GTCCTCAAATCCCTCAACAAGACCTACCAGAACCTGAAGAGGAAGCCCGTGGCGGTGGACCTGGACCCGAAGGCTGTCACCTGTGATGAGCTGTTTGGCATTATCAACCCGGCGACCAGGGAGTGGAAAGATG
Seq A exon
GCCTGTTCTCAACCATCATGCGGGACCTGGCCAACCTCACGCACGAGGGTCCCAAGTGGATTGTCCTGGACGGGGACATAGATCCCATGTGGATTGAGTCCCTTAACACAGTCATGGACGACAACAAG
Seq C2 exon
GTCCTCACCCTGGCCAGCAACGAGCGAATTCCCTTGAATCGCACCATGAGGCTGGTGTTTGAGATCAGCCACCTGAGGACAGCCACCCCAGCCACCGTCTCTAGGGCCGGCATACTCTATATCAACCCTGCGGATCTAGGGTGGAACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987-'55-58,'55-57,56-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(32.1=100)
A:
PF077289=AAA_5=FE(30.7=100)
C2:
PF077289=AAA_5=PD(25.5=70.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAACCTGAAGAGGAAGCCC
R:
CCCTAGATCCGCAGGGTTGAT
Band lengths:
247-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types