BtaEX6090386 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000920 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr19:54358310-54359628:+
Coord C1 exon
chr19:54358310-54358467
Coord A exon
chr19:54359106-54359244
Coord C2 exon
chr19:54359401-54359628
Length
139 bp
Sequences
Splice sites
3' ss Seq
GACCCCCCCGGACCCCTCAGGCC
3' ss Score
5.83
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTAAAATGTGTCCAAGATGCAATTCGGGCCAAGAAGAAAACGTTTAATTTCCTGGGAGAGATGATAAGCCTCATCCCCACCGTCGGCATCTTCATCACCATGAACCCGGGGTATGCCGGGCGCACGGAGCTGCCAGAGAACTTAAAGGCCTTGTTCAG
Seq A exon
GCCCTGTGCCATGGTGGTTCCCGACTTTGAACTGATATGCGAGATCATGCTGGTGGCCGAGGGCTTTCTGGAAGCCCGCCTTCTGGCCAGGAAGTTCATCACACTCTACACCTTGTGCAAAGAGCTGCTGTCAAAGCAG
Seq C2 exon
GATCACTATGACTGGGGCCTGCGAGCCATCAAGTCTGTGCTGGTGGTGGCCGGCTCCCTGAAGAGGGGCGACCCCAGCCGGGCAGAGGACCAGGTGCTGATGCGGGCGCTCAGGGACTTCAATATCCCCAAGATCGTCACCGACGACCTGCCCGTGTTCATGGGGCTCATCGGGGACCTCTTCCCCGCCCTGGATGTGCCTCGGAAACGGGACCTGAATTTTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000920-'36-39,'36-38,37-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(22.5=100)
A:
PF127742=AAA_6=FE(19.9=100)
C2:
PF127742=AAA_6=PD(10.4=31.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGAGCTGCCAGAGAACTTA
R:
AATTCAGGTCCCGTTTCCGAG
Band lengths:
255-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]