MmuEX6091618 @ mm10
Exon Skipping
Gene
ENSMUSG00000033987 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:118081884-118082982:-
Coord C1 exon
chr11:118082825-118082982
Coord A exon
chr11:118082301-118082439
Coord C2 exon
chr11:118081884-118082111
Length
139 bp
Sequences
Splice sites
3' ss Seq
GCTGCTCGGTCACCTCTCAGGCC
3' ss Score
6.02
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
Exon sequences
Seq C1 exon
GTAAAGTGTGTCCAAGATGCAATTCGGGCCAAGAAAAAGAAGTTTAACTTCCTGGGAGAGATAATAAGCCTTGTCCCCACCGTGGGCATCTTTATCACCATGAATCCTGGCTACGCAGGGCGCACGGAGCTGCCGGAGAACTTGAAGGCCCTATTCAG
Seq A exon
GCCCTGTGCCATGGTGGTCCCTGACTTCGAGTTGATTTGTGAGATCATGCTTGTGGCCGAGGGCTTCCTGGATGCTCGCCTCCTGGCCCGGAAGTTCATCACCCTCTACACCCTGTGCAAAGAGCTGCTCTCTAAGCAG
Seq C2 exon
GACCATTATGACTGGGGCCTTCGGGCCATCAAGTCTGTGCTGGTGGTAGCCGGCTCCTTGAAGAGGGGAGACCCCACCCGGGCAGAGGACCAGGTGCTCATGAGGGCCCTGAGAGACTTCAACATCCCCAAGATCGTGACTGATGACCTGCCCGTGTTCATGGGGCTGATCGGCGACCTCTTCCCAGCTCTGGACGTGCCCCGGAAGCGAGACCTGAATTTTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987-'50-54,'50-53,52-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(22.5=100)
A:
PF127742=AAA_6=FE(19.9=100)
C2:
PF127742=AAA_6=PD(10.4=31.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGCCGGAGAACTTGAAG
R:
AAATTCAGGTCTCGCTTCCGG
Band lengths:
253-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types