GgaEX6016563 @ galGal3
Exon Skipping
Gene
ENSGALG00000007106 | DNAH17
Description
NA
Coordinates
chr18:9753072-9754350:+
Coord C1 exon
chr18:9753072-9753229
Coord A exon
chr18:9753559-9753697
Coord C2 exon
chr18:9754132-9754350
Length
139 bp
Sequences
Splice sites
3' ss Seq
AACCTTCTCTGCTTCCCCAGACC
3' ss Score
9.17
5' ss Seq
CAGGTAACG
5' ss Score
10.52
Exon sequences
Seq C1 exon
GTGAAATGTGTTCAGGATGCAATTCGTGCTAAAAAGAAAACGTTCAATTTTCTCGGAGAGACGATATCGCTGGTGCCATCGGTCGGGCTGTTCATCACGATGAACCCTGGCTATGCAGGACGGACAGAACTGCCCGAAAACTTAAAGGCTCTGTTCAG
Seq A exon
ACCCTGTGCCATGGTGGTTCCGGACTTTGAGCTCATCTGTGAGATCATGCTCGTTGCAGAAGGCTTTATTGATGCCAAGCTCCTAGCAAGGAAGTTCATTACTTTGTACACACTCTGCAAGGAGCTGCTGTCCAAGCAG
Seq C2 exon
GACCACTACGACTGGGGTCTGCGGGCTATCAAGTCTGTGCTGGTGGTAGCGGGCTCCTTGAAGAGGGGCGACCCGAGCCGTGCCGAGGACCAGGTCCTCATGAGAGCCTTACGGGACTTCAACATCCCAAAGATCGTGACAGATGACCTGCCTGTGTTCATGGGGCTGATTGGGGACCTATTCCCTGCTCTGGACGTCCCCAGGAAGAGGGATTTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106-'14-15,'14-14,15-15=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(22.5=100)
A:
PF127742=AAA_6=FE(19.9=100)
C2:
PF127742=AAA_6=PD(10.4=32.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATGCAGGACGGACAGAAC
R:
GGACGTCCAGAGCAGGGAATA
Band lengths:
248-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]