BtaEX6090388 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000920 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr19:54354638-54356708:+
Coord C1 exon
chr19:54354638-54354798
Coord A exon
chr19:54355435-54355591
Coord C2 exon
chr19:54356604-54356708
Length
157 bp
Sequences
Splice sites
3' ss Seq
TGATTGGATGTCCCTTACAGATG
3' ss Score
7.71
5' ss Seq
AAGGTACCC
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTGGAGAGCTCCCAGGCCTTCACCTGGCAGTCCCAGCTGCGGCACCGCTGGGACGAGGAGAAGAAGCACTGCTTTGCCAACATCTGTGACGCCCAGATCCAGTACTCATATGAGTACCTGGGCAACACCCCGCGGCTGGTCATCACCCCACTCACGGACAG
Seq A exon
ATGCTACATAACCTTGACCCAGTCCCTCCATCTGATCATGGGCGGAGCTCCTGCTGGCCCCGCCGGGACTGGCAAGACCGAGACGACCAAGGACCTGGGCAGAGCCCTGGGCACCATGGTGTACGTCTTCAACTGCTCCGAGCAGATGGACTACAAG
Seq C2 exon
TCCTGCGGAAACATCTACAAGGGCCTGGCCCAGACCGGAGCCTGGGGCTGCTTTGACGAGTTTAATCGGATCTCTGTGGAGGTCTTGTCCGTGATTGCTGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000920-'33-36,'33-35,34-36=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.094 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(8.2=35.2)
A:
PF127742=AAA_6=FE(22.5=100)
C2:
PF127742=AAA_6=FE(14.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGCTCCCAGGCCTTCA
R:
ATCACGGACAAGACCTCCACA
Band lengths:
253-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]