MmuEX6091615 @ mm9
Exon Skipping
Gene
ENSMUSG00000033987 | Dnahc17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:117947382-117949604:-
Coord C1 exon
chr11:117949444-117949604
Coord A exon
chr11:117948227-117948383
Coord C2 exon
chr11:117947382-117947486
Length
157 bp
Sequences
Splice sites
3' ss Seq
TCAATCAAGGTCCTCTGTAGGTG
3' ss Score
2.07
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTGGAGAGTTCGCAGGCCTTCACCTGGCAGTCGCAGCTTCGACACCGCTGGGACGAGGAAAAGAAGCACTGCTTCGCCAACATCTGTGACGCTCAGATCAAATACTCCTACGAGTACCTGGGCAACACACCTCGGCTGGTCATCACCCCACTCACAGATAG
Seq A exon
GTGCTACATCACGCTCACGCAGTCCCTCCACCTGATCATGGGCGGAGCCCCTGCAGGCCCTGCTGGCACGGGCAAGACGGAGACAACCAAGGACCTGGGCAGAGCCCTGGGCACCATGGTGTATGTCTTCAACTGCTCAGAGCAGATGGACTACAAG
Seq C2 exon
TCCTGTGGAAACATCTACAAGGGCCTGGCACAGACGGGAGCCTGGGGTTGCTTTGATGAGTTTAACCGGATCTCGGTGGAGGTCTTGTCTGTGATTGCTGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987-'39-40,'39-39,42-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.075 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(8.2=35.2)
A:
PF127742=AAA_6=FE(22.5=100)
C2:
PF127742=AAA_6=FE(14.7=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGTTCGCAGGCCTTCAC
R:
CAGACAAGACCTCCACCGAGA
Band lengths:
249-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: