GgaEX7009575 @ galGal4
Exon Skipping
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10081031-10081816:+
Coord C1 exon
chr18:10081031-10081191
Coord A exon
chr18:10081262-10081418
Coord C2 exon
chr18:10081712-10081816
Length
157 bp
Sequences
Splice sites
3' ss Seq
TCCCCCACCATCACCCCCAGGTG
3' ss Score
8.33
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTGGAGACCGCGCAGGAGTTTGCATGGCAGTCACAGCTGCGGCACCGCTGGGACGAGGGCCAGAGGCACTGCTATGCCAACATCTGCGACGCGCAGCTGCAGTACGCCTACGAGTACCTGGGCAACACACCACGGCTCGTCATCACCCCGCTGACCGACCG
Seq A exon
GTGCTACATCACCCTGACGCAGTCCCTGCATCTCTTCATGGGAGGGGCCCCTGCTGGCCCTGCAGGCACCGGGAAAACAGAGACCACCAAGGACCTGGGCCGGGCAGTGGGCATGATGGTCTACGTCTTCAACTGCTCCGAGCAGATGGACTATAAG
Seq C2 exon
TCCTGCGGCAATATCTATAAGGGGCTCGCTCAGACCGGAGCCTGGGGCTGCTTCGACGAGTTCAATCGCATCGCGGTGGAGGTGCTGTCAGTGATTGCAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106-'38-39,'38-38,39-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.094 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(8.2=35.2)
A:
PF127742=AAA_6=FE(22.5=100)
C2:
PF127742=AAA_6=FE(14.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGTTTGCATGGCAGTCA
R:
CTGCAATCACTGACAGCACCT
Band lengths:
249-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]