BtaEX6090390 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000920 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr19:54353574-54354798:+
Coord C1 exon
chr19:54353574-54353681
Coord A exon
chr19:54354191-54354322
Coord C2 exon
chr19:54354638-54354798
Length
132 bp
Sequences
Splice sites
3' ss Seq
AGGCATGTTTGCTCCCACAGATC
3' ss Score
8.37
5' ss Seq
AAGGCATGG
5' ss Score
1.51
Exon sequences
Seq C1 exon
ATCGCGCTCACGTGCACCCAAATCTGGTGGGCCACCGAGGTGGGCTTGGCGTTTGCCAGGCTGGAGGAAGGCTACGAAAATGCCATCAAAGATTACAACAAGAAGCAG
Seq A exon
ATCAGCCAGCTCAACGCGCTCATCACTCTGCTCATTGGAAACCTCAGTGCAGGGGACAGAATGAAGATCATGACCATCTGTACCATCGATGTCCACGCCCGGGACGTGGTAGCCAAGATGATCACCGCCAAG
Seq C2 exon
GTGGAGAGCTCCCAGGCCTTCACCTGGCAGTCCCAGCTGCGGCACCGCTGGGACGAGGAGAAGAAGCACTGCTTTGCCAACATCTGTGACGCCCAGATCCAGTACTCATATGAGTACCTGGGCAACACCCCGCGGCTGGTCATCACCCCACTCACGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000920-'31-34,'31-33,32-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127742=AAA_6=PU(8.2=35.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACGTGCACCCAAATCTGG
R:
CGTGAGTGGGGTGATGACCAG
Band lengths:
258-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]