GgaEX7009576 @ galGal4
Exon Skipping
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10080407-10081191:+
Coord C1 exon
chr18:10080407-10080514
Coord A exon
chr18:10080633-10080764
Coord C2 exon
chr18:10081031-10081191
Length
132 bp
Sequences
Splice sites
3' ss Seq
TCACTTCTTTCCTTCCTCAGATC
3' ss Score
12.05
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
Exon sequences
Seq C1 exon
GTTGCTCTGACCTGCACCCAGATCTGGTGGACCACAGAAGTCGGCATGGCCTTCGCAAGGCTGGAGGAGGGCTATGAAAATGCAATTAAGGACTACAACAAAAAGCAG
Seq A exon
ATCACTCAGCTGAACGCGCTGATCTCGCTGCTCATTGGGAACTTGTCTGCGGGAGACAGAATGAAGATCATGACGATCTGCACCATCGATGTGCACGCCAGAGACGTCGTGGCCAAAATGATCCTCACGAAG
Seq C2 exon
GTGGAGACCGCGCAGGAGTTTGCATGGCAGTCACAGCTGCGGCACCGCTGGGACGAGGGCCAGAGGCACTGCTATGCCAACATCTGCGACGCGCAGCTGCAGTACGCCTACGAGTACCTGGGCAACACACCACGGCTCGTCATCACCCCGCTGACCGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106-'36-36,'36-35,37-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127742=AAA_6=PU(8.2=35.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGACCTGCACCCAGATCT
R:
GATGACGAGCCGTGGTGTG
Band lengths:
248-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]