MmuEX6091613 @ mm10
Exon Skipping
Gene
ENSMUSG00000033987 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:118088130-118090802:-
Coord C1 exon
chr11:118090716-118090802
Coord A exon
chr11:118088950-118089081
Coord C2 exon
chr11:118088130-118088290
Length
132 bp
Sequences
Splice sites
3' ss Seq
CTCTCACTCTCTCTCTGCAGATC
3' ss Score
14.19
5' ss Seq
AAGGCAGGA
5' ss Score
1.7
Exon sequences
Seq C1 exon
ATCTGGTGGACGACGGAGGTGGGCCTGGCGTTCGCAAGGCTGGAGGAAGGCTACGAAAACGCCATCAAAGACTACAACAAAAAGCAG
Seq A exon
ATCAGCCAGCTGAATGCGCTCATCACTCTGCTCATTGGAAATCTCACCGCCGGTGACAGGATGAAGATCATGACCATCTGCACCATCGATGTGCACGCCCGAGACGTGGTGGCCAAGATGATCACCGCTAAG
Seq C2 exon
GTGGAGAGTTCGCAGGCCTTCACCTGGCAGTCGCAGCTTCGACACCGCTGGGACGAGGAAAAGAAGCACTGCTTCGCCAACATCTGTGACGCTCAGATCAAATACTCCTACGAGTACCTGGGCAACACACCTCGGCTGGTCATCACCCCACTCACAGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987-'41-45,'41-44,43-45
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127742=AAA_6=PU(8.2=35.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGGTGGACGACGGAGG
R:
TCTGTGAGTGGGGTGATGACC
Band lengths:
245-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types