BtaEX6090897 @ bosTau6
Exon Skipping
Description
LOC526787 protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q1LZH3]
Coordinates
chr19:56995142-56996073:-
Coord C1 exon
chr19:56995978-56996073
Coord A exon
chr19:56995541-56995774
Coord C2 exon
chr19:56995142-56995304
Length
234 bp
Sequences
Splice sites
3' ss Seq
CCCCCCACACCTGCCCCCAGAAA
3' ss Score
7.09
5' ss Seq
CAGGCAAGG
5' ss Score
3.33
Exon sequences
Seq C1 exon
GTCGAGGTTCGGAAGGTCCAGGCCAACGTGGAGAACCAGATGTTGATCATCACCTCTGACAGCCAAAAGCACCGGGGCCAGGTGGCTTTTCTCTCG
Seq A exon
AAATTGATCCAGACGACTCGGGACGAGGTGAACGCCTGCTTCTCAGAGATCATCCAGGAGATCAAACAGATGCAGATGAAGGTGCTGGATTTCGTGGAGAAAGAGGAGGCTGCCGCCCTGGGGAAGCTGGGCGGCTCCATCCAGCAGAGTCACAACCGGCTCCTGAAGCTGGAGGGGGACAGCATCTGGCTCCGAAGCCTGCTTGCCAACCGCAGCGACCAGCAGTTTCTGCAG
Seq C2 exon
GAGTTGCCCAGGCTGAAGCACTTCCCTGCCTGCGTGGAGCCCCTGATGGGCACCAACTGCGAGGAGAAGCAGAGCTTCCTCCAGCTGCCAGAGACGTTGGCAGAGCTCCGGACCCGACTGGTGGACATGGGTCTCAGCTTCATCAACCAGCTCCTCCTGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026645-'4-7,'4-5,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGGTTCGGAAGGTCCAG
R:
GGAGGAGCTGGTTGATGAAGC
Band lengths:
252-486
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]