MmuEX6091113 @ mm10
Exon Skipping
Gene
ENSMUSG00000070332 | Trim80
Description
tripartite motif-containing 80 [Source:MGI Symbol;Acc:MGI:3588186]
Coordinates
chr11:115445016-115446568:+
Coord C1 exon
chr11:115445016-115445111
Coord A exon
chr11:115445311-115445544
Coord C2 exon
chr11:115446406-115446568
Length
234 bp
Sequences
Splice sites
3' ss Seq
TCCCTGCACATCTACCTCAGAAA
3' ss Score
5.97
5' ss Seq
CAGGCAAGA
5' ss Score
3.01
Exon sequences
Seq C1 exon
GTGGAAGTTCGGAAGATTCAGGCCAATGTGGAGAACCAGATGCTGATCATTGCCTCTGACAGTCAGAAACACCAGGGACGAGTGAGTTTTCTCTCG
Seq A exon
AAACTGATTCAGACCATGCGAGACGAGGTGGACACCTGCTTCTCAGAGATCCTCCATGAGATTAAACAGCTGCAGATGAAGGTCTTGGATTTTGTGGAGAAGGAGGAGGCGGCCGCCCTAGGAAAGCTGGGCAACTCTATCCAGCAAAGCCACAACCGGCTGCTCAAGTTGGAGGGGGACAGCGTCTGGCTCCACAGCCTGCTCGCCAACAGGAGTGATGAGCAATTCCTACAG
Seq C2 exon
GAGTTCCCCAAACTGAAGCACTTCCCTGCCTGCGTGGAACCCTTGCTAGGCACCAACTGTGAGGAGACACAGAGCTTCCTTCAGCTGCCAGAGACCCTGTCGCAGCTCCGGATCAGGCTGATGGACATAGGGCTTAGCTTTATCAACCAGCTTCTCTTGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070332_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.013 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGTTCGGAAGATTCAGGCC
R:
TCAAGAGAAGCTGGTTGATAAAGCT
Band lengths:
254-488
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types