DreEX6029083 @ danRer10
Exon Skipping
Gene
ENSDARG00000067985 | ftr23
Description
finTRIM family, member 23 [Source:ZFIN;Acc:ZDB-GENE-070912-322]
Coordinates
chr2:48054487-48055503:+
Coord C1 exon
chr2:48054487-48054582
Coord A exon
chr2:48054649-48054882
Coord C2 exon
chr2:48055356-48055503
Length
234 bp
Sequences
Splice sites
3' ss Seq
ACGTTTCTTCACCCTAACAGCAC
3' ss Score
7.81
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
AAACTGTTGTTGGACTTACAGAGAAACTTCCAGAAGACAATCCAGGAGAGAGAGGAGGAGGTTTGGGAGCTGAAACATGCCGTGAAGACTCATAAG
Seq A exon
CACTCTGCACAGACAGCAGTGGAGGAAAGTGAGAGGATCTTCACTAGACTATTCCACTTTATTGAGAGAAGACGATCTGAGGTCTCGCAGATGATCAGAGATCGAGAAAAGACTGAAGTGAGTCGAGCTGAAGGACTCTTGAAGAAACTGGAGCAGGAGATTGAAGATCTGAAGAGGAGAAACACTGAGCTGGAGCAGCTTTCACACACTGATGATCACATACATTTCCTACAG
Seq C2 exon
AGTTTCCAGTCTCTCTCTGCTCCTCCTGAATCTCCAGAAAGCAGTGATGTTACTTCTCTCCTCTTTTATGATGACGTGGGTGAAACTCTCTCTGTCCTGAAAGAGAAACTTGAGGACGCCTGCAAGGAAGCCACAGAAAATATGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067985-'3-5,'3-3,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.231 C2=0.259
Domain overlap (PFAM):
C1:
NO
A:
PF149161=CCDC92=WD(100=33.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTGTTGTTGGACTTACAGAGA
R:
CAGACATATTTTCTGTGGCTTCCT
Band lengths:
244-478
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]