MmuEX6086133 @ mm9
Exon Skipping
Gene
ENSMUSG00000047821 | Trim16
Description
tripartite motif-containing 16 [Source:MGI Symbol;Acc:MGI:2137356]
Coordinates
chr11:62642605-62650346:+
Coord C1 exon
chr11:62642605-62642700
Coord A exon
chr11:62647481-62647714
Coord C2 exon
chr11:62650181-62650346
Length
234 bp
Sequences
Splice sites
3' ss Seq
TCCCCCTCCGTCCCCATCAGGTG
3' ss Score
9.97
5' ss Seq
GAGGTGCGG
5' ss Score
6.79
Exon sequences
Seq C1 exon
GTGGACCTTCGGTGTATGCAGTTGGACCTGGAGCAGAAGCTTAAGTTGAATGAAAATGCCATTGCCAGGCTCCAAGCTAACCATAAGTCTGTTTTG
Seq A exon
GTGTCGGTGTCAGAGGTGAAGGTGGTAGCTGAAGAGAAGTTTGGGGAACTCCTCGCAGCTGTACGGAAGGCCCAGGCAGATGTGATGGTCTTCCTAGAGGAGAAAGAACAGGCTGCACTGAATCAAGTCAACAGCATCAAAACCCATCTGGAGCACAGGAGCCTCGAGATGGAGAAAAGCAAGCAGGAGCTGGAGAGGCTGGCCGCCATCAGCAACACTGTGCTGTTCCTGGAG
Seq C2 exon
GAGTACTGCAAGCTCAAGAAGACAGAGGACACTGCCTCCCCTAGCATTTACATAGGGCTGAAGGACAAACTCTCAGGCATCCGCAAGGTCATCACAGATTCAACTCTGAACTTGATCCAATTGCTAGAAAGCTATAAGGAAAAGCTCCAGGAATTTTCCAGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047821-'3-8,'3-7,4-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGACCTTCGGTGTATGCAG
R:
GGAAAATTCCTGGAGCTTTTCCT
Band lengths:
255-489
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: