BtaEX6087343 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MLX8]
Coordinates
chr19:33639673-33643192:-
Coord C1 exon
chr19:33643097-33643192
Coord A exon
chr19:33640158-33640391
Coord C2 exon
chr19:33639673-33639838
Length
234 bp
Sequences
Splice sites
3' ss Seq
CTCCCCGCTCTCGCCACTAGGTG
3' ss Score
10.27
5' ss Seq
GAGGTATGG
5' ss Score
8.98
Exon sequences
Seq C1 exon
GCTGAGCTTCGGAGAACCCAGTTAGACCTGGAGCGGAAACTCAAGTTGAATGAAAATGCCATCTCCAGGCTCCAGGCAAACCATAAATCTGTCCTG
Seq A exon
GTGTCAGTGTCGGAGGTGAAGGCCGGGGTGGAGGAGCAGTTCGGGGAGCTCCGTGCTGCCTTGACGAAGGCCCAGGCCGACGTGATGCTCTTCCTGGAGGAGAAGGAGCAAGCTGCCCTGGGCCAGGCCAATGGCATCAAGACCCACCTGGAGTACAGGAGTGCAGAGATGGAGAAGGCCAGGCAGGAGCTGGACAGGATCGCTGCCATTGGCAGTCCCGTGCTGTTCCTGGAG
Seq C2 exon
GAGTACTGCAAGTTCAAGAACACGGAGGACGGCGCCTTCCCCAGCGTCTACATAGGGCTCAAGGACAAGCTATCAGGCATCCACAAGGTCATCATGGACTCCACTGCCCTCCTGATCCAGCTGCTCCAGAGCTACAAAGAGAAGCTCCAGGAGTTCTCCAAGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002605-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGAGAACCCAGTTAGACCT
R:
GGAGAACTCCTGGAGCTTCTCT
Band lengths:
247-481
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]