RnoEX6047686 @ rn6
Exon Skipping
Gene
ENSRNOG00000003219 | Trim16
Description
tripartite motif-containing 16 [Source:RGD Symbol;Acc:1309749]
Coordinates
chr10:49240930-49248451:+
Coord C1 exon
chr10:49240930-49241025
Coord A exon
chr10:49245589-49245822
Coord C2 exon
chr10:49248286-49248451
Length
234 bp
Sequences
Splice sites
3' ss Seq
TCCCACTCCATCCCCATCAGGTG
3' ss Score
7.25
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GCTGACCTTCGGTGCATGCAGCTGGACCTGGAGCAGAAGCTCAAGTTGAACGAAAATGCCATTGCCCGGCTCCAAGCCAACCACAAGTCTGTTTTG
Seq A exon
GTGTCCGTGTCAGAGGTGAAGGTGGTGGCTGAAGAGAAGTTTGGGGAACTCCTCGCAGCCGTGAGGAAGGCCCAGACTGATGTGATGCTCTTCTTAGAGGAGAAAGAACAGGCTGCACTGAATCAGGTCAACGGCATCAAGACCCACCTGGAGCACAGGAGCATCGAGATGGAGAAAAACAAGCAGGAGCTGGAGAAGTTGGCCTCCATCAGCAACACTGTGCTCTTCCTGGAG
Seq C2 exon
GAGTACTGCAAGCTTAAGAAGACAGAGGACACTGCCTTCCCCAGCGTTTACATCGGGCTGAAGGATAAACTCTCAGGCATCCGCAAGGTCATCACAGAGTCAACTCTGAACTTGATCCAGTTGCTAGAAAGCTATAAGGAAAAGCTTCAGGAATTTTCCAGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003219-'3-7,'3-5,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.026 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000065335fB15599
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACCTTCGGTGCATGCAG
R:
GGAAAATTCCTGAAGCTTTTCCT
Band lengths:
254-488
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]