DreEX0081146 @ danRer10
Exon Skipping
Gene
ENSDARG00000010673 | trim16
Description
tripartite motif containing 16 [Source:ZFIN;Acc:ZDB-GENE-090512-6]
Coordinates
chr12:46675118-46680593:+
Coord C1 exon
chr12:46675118-46675213
Coord A exon
chr12:46677588-46677821
Coord C2 exon
chr12:46680422-46680593
Length
234 bp
Sequences
Splice sites
3' ss Seq
CTCTGTCTGTGTGTGTTTAGGGC
3' ss Score
10.99
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
AAAGAGCTTCAGGACAAGCAGACAGAAATGCTGAAGACGATGACGGCCGCAGAAAACGCCATTAACAAGCTGCAGGTCAACACTGTGTCTATAGAG
Seq A exon
GGCTCAGTGCAGGAGGTGCGGGCTGTGATGGAGGAGCAGTTCAGTATCCTGCAGGCCGCAGTGGAGCAGGTGAAGCGGGATGTGTGTGAGCTGCTGGAGGCGGAGGAGCGGCAGGCGCTGCGGCAGGCCGATGGCATACGGGTGCATCTGGAGCAGCGCTGCGCTGAACTCAAGAAAACACAGAGCAGAGTCCAGAAGATCAGCAAGAACAAGCACGACATACACTTCCTGCAG
Seq C2 exon
GAGTATTCAGAGTGGAAGAAGGAGGCAGTGGACGTGTCTTTGCCTGGGGTTTATATCGGCCTCGTGGATCGACTGCAGGCGTTCAGTCACGTGATCGTTCGCTCCACGAATAGGATGTGTGATAATCTGCACAGCTCGTACACCAACAAACTCAAAGACACCTGTAAGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010673-'3-4,'3-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.273 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF100794=DUF2317=FE(25.8=100)
A:
PF100794=DUF2317=FE(62.9=100)
C2:
PF100794=DUF2317=PD(3.2=6.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCAGGACAAGCAGACAGA
R:
CGTTCTTACAGGTGTCTTTGAGT
Band lengths:
263-497
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]