DreEX6029080 @ danRer10
Exon Skipping
Gene
ENSDARG00000093651 | ftr23
Description
finTRIM family, member 23 [Source:ZFIN;Acc:ZDB-GENE-070912-322]
Coordinates
chr2:48074005-48075111:+
Coord C1 exon
chr2:48074005-48074100
Coord A exon
chr2:48074201-48074434
Coord C2 exon
chr2:48074961-48075111
Length
234 bp
Sequences
Splice sites
3' ss Seq
TTATCTGTATTCTCTACCAGAGC
3' ss Score
8.93
5' ss Seq
CAGGTAGCA
5' ss Score
6.37
Exon sequences
Seq C1 exon
AAACCCTTGGGGGGTGTTCAAAGAAAATTTGATCTTAGAATCAAGAGAAAACAGAAGCTGCTATATCAGCTAAAAGAGGCTGTGGAGACTCATAAG
Seq A exon
AGCTCTGCTCAGAAAGCAGTGGAGGACAGTGAGAGGATCTTCAGTGAACTCATCCAGTCCATTGAGAGAAGACGATCTGAGGTCACACAGATGATCAGAGATCGAGAAAAGACTGAAGTGAGTCGAGCTGAAGGACTCTTGAAGAAACTGGAGGAGGAGATTGAAGATCTGAAGAGGAGAAACACTGAGCTGGAGCAGCTTTCACACACTGATGATCACATACATTTCCTACAG
Seq C2 exon
AGTATCCCGGTTCTCTCTGTTCCTCCTGCATCCTCAGACATCAGTGTCAGTTCTCTCCACTCATATGATGATGTGGGTAAATCCATCTCAGAGCTAAGAGAGAAACTTGAGGACCTTTGCAAAGAGGACATACAACAAATATTTGGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093651-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.231 C2=0.010
Domain overlap (PFAM):
C1:
NO
A:
PF149161=CCDC92=WD(100=37.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAAGAGAAAACAGAAGCTGCT
R:
ACCAAATATTTGTTGTATGTCCTCTT
Band lengths:
204-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]