RnoEX0093750 @ rn6
Exon Skipping
Gene
ENSRNOG00000028812 | Trim80
Description
tripartite motif protein 80 [Source:RGD Symbol;Acc:1311352]
Coordinates
chr10:103997496-103999024:+
Coord C1 exon
chr10:103997496-103997591
Coord A exon
chr10:103997785-103998018
Coord C2 exon
chr10:103998862-103999024
Length
234 bp
Sequences
Splice sites
3' ss Seq
TCCCTTCACGTCTACCTCAGAAA
3' ss Score
7.41
5' ss Seq
CAGGCAAGA
5' ss Score
3.01
Exon sequences
Seq C1 exon
GTGGAAGTTCGGAAGATTCAGGCCAATGTGGAGAATCAAATGCTAATCATTGCCTCGGACAGCCAGAAACACCAGGGACGAGTGAGTTTCCTCTCG
Seq A exon
AAACTGATTCAGACGATGCGAGAAGAGGTGAACACCTGCTTCTCAGAGATCCTCCATGAGGTTAAACAGCTGCAGATGAAGGTCTTGGATTTTGTGGAGAATGAGGAGACAGTTGCCCTGGGAATGCTGGGTAACTCCATGCAACAAAGCCACAGCCGGCTCCTGAAGTTGGAGGGGGACAGCGTCTGGCTCCACGGCCTGCTGGCCAACAAGAGCGATGAGCAGTTTCTACAG
Seq C2 exon
GAGTTCCCCACACTGAAGCACTTCCCTGCCTGCGTGGAACCCTTACTAGGCACCAACTGTGAGGAGACACAGAGCTTCCTCCAGCTGCCAGAGACCCTGGCCCAGCTCCGCATCAGGCTGATGGACATAGGTCTTAACTTCATCAACCAGCTGCTCTTGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028812_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.013 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGTTCGGAAGATTCAGGCC
R:
CCTTCAAGAGCAGCTGGTTGA
Band lengths:
257-491
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]