BtaEX6091520 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021581 | FHOD3
Description
formin homology 2 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:26178]
Coordinates
chr24:20833949-20862736:-
Coord C1 exon
chr24:20862642-20862736
Coord A exon
chr24:20843136-20843247
Coord C2 exon
chr24:20833949-20834043
Length
112 bp
Sequences
Splice sites
3' ss Seq
GTTGTGTCTTGTCTCCACAGTTC
3' ss Score
10.53
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
CTTTGGGCCAGATTATGTTGTACGTGGATGGGATGAATGGAGTAATAAACCACAATGAAACCATTCAGTGGCTGTATACTCTCATTGGGTCAAAG
Seq A exon
TTCCGCCTGGTGGTGAAGACAGCCCTGAAGCTGCTGCTGGTCTTTGTGGAATACTCGGAGTCCAATGCACCTCTCCTGATTCAGGCCATCTCTGCCGTGGACACAAAAAGGG
Seq C2 exon
GAGTCACACCCTGGTCAAATATCATGGAAATCCTGGAGGAAAAGGATGGGGTCGACACGGAACTGCTGGTTTACGCGATGACTTTAGTGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021581-'14-14,'14-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=FE(26.1=100)
A:
PF063718=Drf_GBD=PD(12.6=39.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCCAGATTATGTTGTACGTG
R:
TTGTTCACTAAAGTCATCGCGT
Band lengths:
186-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]