GgaEX6020762 @ galGal3
Exon Skipping
Gene
ENSGALG00000013124 | FHOD3
Description
NA
Coordinates
chr2:85580234-85613348:+
Coord C1 exon
chr2:85580234-85580328
Coord A exon
chr2:85606510-85606621
Coord C2 exon
chr2:85613254-85613348
Length
112 bp
Sequences
Splice sites
3' ss Seq
AGTTGTGCTCTTTTTTTCAGTTC
3' ss Score
9.27
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
CCTTGGGCCAGATTATGCTCTACGTTGATGGCATGAATGGAGTAATAAACCATAATGAAACCATCCAATGGCTGTACACACTTATTGGGTCAAAG
Seq A exon
TTCCGCCTTGTGGTAAAGACAGCACTGAAGCTGCTGCTTGTATTTGTGGAGTACACTGAATCCAATGCACCACTTTTAATCCAAGCAGTATCTACAGTTGATGAAAAGAGAG
Seq C2 exon
GAGCCAAGCCTTGGTCCAACATCATGGAGATCCTGGAGGAGAAAGATGGGGTTGATACTGAACTACTGGTTTATGCCATGACTTTGGTTAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013124-'6-13,'6-11,7-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGGGCCAGATTATGCTCT
R:
CTTGTTAACCAAAGTCATGGCA
Band lengths:
190-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]