DreEX6040361 @ danRer10
Exon Skipping
Gene
ENSDARG00000061904 | fhod3b
Description
formin homology 2 domain containing 3b [Source:ZFIN;Acc:ZDB-GENE-081028-61]
Coordinates
chr16:18889436-18896624:-
Coord C1 exon
chr16:18896530-18896624
Coord A exon
chr16:18891220-18891331
Coord C2 exon
chr16:18889436-18889530
Length
112 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTTTGCGCAGTTC
3' ss Score
8.07
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
CACTTGGACAGATCATGCTGTATGTAGATGGAATGAATGGGCTTATCGGACACAATGAAACCGTACAGTGGCTGTACACACTGGTTGGATCAAAG
Seq A exon
TTCCGGTTGGTTGTGAAAACTGCTATGAAGCTGCTGCTGGTTTTTGTGGAGTACACCGAGAGCAACGCACCTCTCCTCATCCAAGCCGTCAACAGCGTTGACACCAAACAAG
Seq C2 exon
GCTCTAAGCCCTGGTCTAATGCCATGGAAATCCTTGACGAGAAAGATGGAATGGACACTGAGCTGCTGGTTTATGCCATGACACTAATCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061904-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.083
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=FE(21.5=100)
A:
PF063718=Drf_GBD=PD(10.4=39.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGATCATGCTGTATGTAGATGGA
R:
TGATTAGTGTCATGGCATAAACCA
Band lengths:
178-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]