HsaEX6044341 @ hg19
Exon Skipping
Gene
ENSG00000135723 | FHOD1
Description
formin homology 2 domain containing 1 [Source:HGNC Symbol;Acc:17905]
Coordinates
chr16:67271378-67272031:-
Coord C1 exon
chr16:67271937-67272031
Coord A exon
chr16:67271560-67271671
Coord C2 exon
chr16:67271378-67271472
Length
112 bp
Sequences
Splice sites
3' ss Seq
GTACTGACCTCTCTCCTCAGTCC
3' ss Score
8.53
5' ss Seq
CCGGTCAGA
5' ss Score
5.27
Exon sequences
Seq C1 exon
CGCTCGGCCAGCTGATGCTCTTTGTGGATGGAATGCTGGGGGTGGTGGCCCACAGTGACACTATTCAGTGGCTGTACACATTGTGTGCCAGCCTG
Seq A exon
TCCCGCTTGGTGGTGAAGACAGCCCTGAAGCTGCTGTTGGTGTTTGTAGAATACTCCGAAAACAACGCACCGCTGTTCATCCGTGCAGTGAACTCTGTGGCCAGCACCACCG
Seq C2 exon
GTGCTCCTCCCTGGGCCAATCTGGTGTCCATCCTGGAGGAGAAGAATGGCGCTGACCCTGAGTTGTTGGTGTACACGGTCACCCTCATCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135723-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGATGCTCTTTGTGGATGGA
R:
GGTGACCGTGTACACCAACAA
Band lengths:
168-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)