RnoEX6060263 @ rn6
Exon Skipping
Gene
ENSRNOG00000054625 | Fhod1
Description
formin homology 2 domain containing 1 [Source:RGD Symbol;Acc:1589776]
Coordinates
chr19:37292723-37293363:-
Coord C1 exon
chr19:37293269-37293363
Coord A exon
chr19:37292906-37293017
Coord C2 exon
chr19:37292723-37292817
Length
112 bp
Sequences
Splice sites
3' ss Seq
TGGATTGACTTCTCCCCCAGTCC
3' ss Score
6.17
5' ss Seq
CCGGTCAGA
5' ss Score
5.27
Exon sequences
Seq C1 exon
CCCTGGGCCAGCTGATGCTTTTTGTGGATGGGATGCTAGGGGTGGTGGCGCACAGTGAGACCGTGCAATGGCTGTATACACTGTGTGCAAGCCTG
Seq A exon
TCCCGCTTGGTGGTAAAGACAGCCCTGAAGCTGCTGCTGGTGTTTGTGGAGTATTCTGAGAACAATGCACCGCTCTTCATCCAGGCAGTCAACGCTGTAGCCAGCAACACCG
Seq C2 exon
GTACTCTTCCCTGGGCCAACTTGGTGTCCATCCTGGAGGAGAAGAATGGAGTTGATCCAGAGCTGTTGGTGTACACGGTCACTCTCATTAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054625-'7-16,'7-15,8-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGATGCTTTTTGTGGATGGG
R:
TGTTAATGAGAGTGACCGTGTACAC
Band lengths:
178-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]