MmuEX0019229 @ mm9
Exon Skipping
Gene
ENSMUSG00000014778 | Fhod1
Description
formin homology 2 domain containing 1 [Source:MGI Symbol;Acc:MGI:2679008]
Coordinates
chr8:107861023-107861669:-
Coord C1 exon
chr8:107861575-107861669
Coord A exon
chr8:107861218-107861329
Coord C2 exon
chr8:107861023-107861117
Length
112 bp
Sequences
Splice sites
3' ss Seq
TGGATTGGCTTCTCCCCCAGTCC
3' ss Score
6.55
5' ss Seq
CCGGTCAGA
5' ss Score
5.27
Exon sequences
Seq C1 exon
CCCTGGGCCAGCTGATGCTGTTTGTGGATGGGATGCTGGGGGTGGTGGCCCACAGCGAGACCGTGCAGTGGCTGTATACCCTGTGTGCTAGCCTG
Seq A exon
TCCCGCTTGGTGGTAAAGACAGCCCTGAAGCTGCTGCTGGTGTTTGTGGAGTATTCCGAGAACAACGCGCCGCTGTTCATCCAGGCAGTCAACGCAGTAGCCAGTGCCACCG
Seq C2 exon
GTACTCTTCCCTGGGCCAACTTGGTGTCCATCCTGGAGGAGAAGAATGGAGCTGATGCAGAGTTGTTGGTGTACACTGTCACTCTCATTAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014778-'7-8,'7-7,8-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0636711=Drf_FH3=PU(7.5=21.1)
C2:
PF0636711=Drf_FH3=FE(29.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGATGCTGTTTGTGGATGG
R:
TGTTAATGAGAGTGACAGTGTACACC
Band lengths:
178-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: