RnoEX0036024 @ rn6
Exon Skipping
Gene
ENSRNOG00000027230 | Fhod3
Description
formin homology 2 domain containing 3 [Source:RGD Symbol;Acc:2322319]
Coordinates
chr18:17160027-17182812:+
Coord C1 exon
chr18:17160027-17160121
Coord A exon
chr18:17175978-17176089
Coord C2 exon
chr18:17182718-17182812
Length
112 bp
Sequences
Splice sites
3' ss Seq
ATGTTCTGTCTTTTCTCCAGTTC
3' ss Score
10.01
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
CACTGGGTCAGATTATGCTGTATGTGGATGGGATGAATGGCGTCATCAACCACAGCGAGACCATCCAGTGGCTTTACACTCTTGTTGGCTCAAAG
Seq A exon
TTCCGCCTGGTGGTGAAGACGGCCCTGAAGCTTCTGCTGGTCTTTGTGGAGTATTCTGAGTCCAATGCACCGCTTCTCATTCAGGCTGTTTCTGCTGTTGACACCAAAAGAG
Seq C2 exon
GTGTCAAACCCTGGTCCAACATCATGGAAATCTTGGAGGAAAAAGATGGAGTTGACACAGAACTCTTGGTTTATGCAATGACTCTAGTAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027230_MULTIEX1-2/10=1-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=FE(22.1=100)
A:
PF063718=Drf_GBD=PD(10.7=39.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGGGTCAGATTATGCTGT
R:
GTTTACTAGAGTCATTGCATAAACCA
Band lengths:
187-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]