BtaEX6091707 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013831 | DSG1
Description
Bos taurus desmoglein 1 (DSG1), mRNA. [Source:RefSeq mRNA;Acc:NM_174045]
Coordinates
chr24:26102575-26108711:-
Coord C1 exon
chr24:26108452-26108711
Coord A exon
chr24:26105538-26105677
Coord C2 exon
chr24:26102575-26102865
Length
140 bp
Sequences
Splice sites
3' ss Seq
CCACTGTCTTTCAAAAACAGATA
3' ss Score
7.79
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
CCCCTAGATTTTGAAGCTATGAATAATCTGCAACTTAGTCTTGGTGTTAGAAATAAAGCTGAATTTCATCAATCAATTATGTCTCAATATAAACTCACAGCAACTGCAATCTCTGTGACCGTGTTAAACGTAGTTGAAGGCTCAGTGTTCCGTCCAGGTTCAAAGACATTTGTAGTAAATAGTAATATGGGACAAAACTATAAAATAGGAGAGTATGTAGCTTGGGATCTCGACGCAAATCGGCCTTCAACAACTGTTAG
Seq A exon
ATACGTAATGGGAAGAAATCCAACTGACTTGCTCGCTATTGACTCAAAAACAGCCATAATTACTTTGAGAAATAAAGTTACTATGGAACAATACAAAATACTTGGGGGAAAATACCAAGGAACAATTCTATCTATAGATG
Seq C2 exon
ATGCTCTTCAAAGAACTTGTACTGGTACAATTGTTATTAACCTTGAAAATGGTGGCTGGAAAACCGAACGTCCAAATGTAAATGGAAGTACTACCTCTGCATATAGCCTTACTTCCGGAGGTGTTACCACTAATGGCTACATAACTGGTGTTGGTGGTGGTGCAAATACTCTTGCTGTTGGCACAAGTGTTTATGTACGTGAACCTGATACTTATCAGACAATAGGAGATAATGTACATTTTGGTCCTGCTGGCATTGGACTACTCATCATGGGATTCTTGGTCCTAGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013831-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.000 C2=0.041
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PD(39.4=47.1),PF0002812=Cadherin=PU(33.7=36.8)
A:
PF0002812=Cadherin=FE(49.5=100)
C2:
PF0002812=Cadherin=PD(15.8=15.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGAAGGCTCAGTGTTCCGT
R:
AACACCTCCGGAAGTAAGGCT
Band lengths:
253-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]