RnoEX6058165 @ rn6
Exon Skipping
Gene
ENSRNOG00000016853 | Dsg1
Description
desmoglein 1 [Source:RGD Symbol;Acc:1309925]
Coordinates
chr18:12028526-12030896:+
Coord C1 exon
chr18:12028526-12028785
Coord A exon
chr18:12029091-12029230
Coord C2 exon
chr18:12030552-12030896
Length
140 bp
Sequences
Splice sites
3' ss Seq
CTGTATTCTTTTAAATACAGATA
3' ss Score
6.21
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
CCCCTAGATTATGAAGCCATGCAGAAACTACAGCTTAGTATTGGTGTTCGAAATGTAGCTGAATTCCACCAGTCAATTCTTTCTCAATATACACTCACAGTGACTATGATCACTGTGAAGGTATTGAATGTCGTCGAGGGCTCTGTGTTCCGACCAGGTTCAAAGACATTTGTGGTACATAGTAGAATGGACGCAAATTACAGAGTGGGGGAGTTCACAGCTACAGACCTGGACACGGGTATGACCTCCACCAATGTTAG
Seq A exon
ATACGTAATGGGAAACAACCCAGAGGGCCTGCTGGTTGTTGACTCAAAAACAGGCATAATAACTTTAAGAAACAGAGTTACTATGGAACAATACCAAAGGCTTAATGGGAGATATGAAGGAACAATGCTATCAATAGATG
Seq C2 exon
ATTCCCTTCAGAGGACCTGCACTGGAACAATCATCATTGAACTTGATGGCACTGGCTGGGAAACAGGTGGTGGTGGTGGCGGTGGCGGTGGCGGTGGTGGTGACGGTGGCGGTGGTGGTGACGGTGGCGGTGGCGGTGGCAGTGGCAGCGGTGGTGATGGCGGCGGTGGAGATGGTGGTGGCCAAGTGACTAATGGATATAAAGACACTTCCACTGAGGAACCGCAACGCACCACATTAACAAGGGATATTGACAATACTGACACTTACCAAGCCGACGAAGACAACGTTCACCTTGGTCCTGCCGGCATCGGTCTGCTCATCATGGGGTTCCTAGTCTTAGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016853-'12-10,'12-9,13-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.026 C2=0.581
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PD(39.4=48.2),PF0002812=Cadherin=PU(30.0=35.3)
A:
PF0002812=Cadherin=FE(49.5=100)
C2:
PF0002812=Cadherin=PD(15.0=78.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGGAGTTCACAGCTACAGA
R:
TAGTCACTTGGCCACCACCAT
Band lengths:
246-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]